PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK13964.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 356aa    MW: 40182.6 Da    PI: 8.5543
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK13964.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.93.9e-53101371128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeel+++yL+ kv + +l     i evd++++ePw+Lp  +k +ekew+fFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+ +g+l
  PK13964.1  10 LPPGFRFHPTDEELITFYLASKVFNGTLCG-VDIVEVDLNRCEPWELPDVAKMGEKEWFFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSAsNGSL 108
                79*************************777.34***************8888899**************************************9978899 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 g+kktLvfykgrap+gekt+Wvmheyrl
  PK13964.1 109 LGMKKTLVFYKGRAPRGEKTKWVMHEYRL 137
                ***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-645159IPR003441NAC domain
PROSITE profilePS5100559.94510159IPR003441NAC domain
PfamPF023652.4E-2711137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
XGEHINEQGL PPGFRFHPTD EELITFYLAS KVFNGTLCGV DIVEVDLNRC EPWELPDVAK  60
MGEKEWFFFS LRDRKYPTGL RTNRATGAGY WKATGKDREV YSASNGSLLG MKKTLVFYKG  120
RAPRGEKTKW VMHEYRLDGN FSSRHTRKEE WVICRIYHKT GEKKNPIFHG RQSCLPALLE  180
AQPTPTPMKA SSSLLEEYEF TTQNPMRTIP SQNLFLNSGS GNDLKSLITN NPVVSQSHLF  240
PIHGLSTSST IATTNKNPSI STSSSSSVLF KSLLSHQNST WNNKQQCQEQ PLTVPKQCKT  300
ETNFSHFQAA TQPLLSSSTH PDKDNYNNFL PNNYNNNNTM LFESDDYGVL GLLSSX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-52716212171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884112.11e-138PREDICTED: protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8511e-99NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A061FGR21e-137A0A061FGR2_THECC; NAC domain transcriptional regulator superfamily protein
STRINGVIT_18s0122g00800.t011e-131(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-100NAC family protein